Reference¶

• Video demonstration at Youtube
• Cyverse Webinar Reference
• Updated Bisque notebooks on CyVerse github account

Data¶

• Sample data from AWS S3
• Download public/shared data from Cyverse Bisque
• Download public/shared data from UCSB Biodev Bisque

Notebooks¶

Use the three samples from CBIucsb Bitbucket repository as described in the video demonstration

• 1_upload_images_group.ipynb
• 2_upload_image_graphical_annotations.ipynb
• 3_modify_annotations.ipynb

General Instructions¶

• Install bisque on local and the relevant packages in the virtual env
• Modify the URL and credentials in the notebooks
• Download the tif/lsm data from the sample data share above and drop it in relevant folders
• Go through each step in the notebook to understand and execute them